Uber-anatomy ontology
Uberon is an integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data.
Ontology information
Anne Niknejad
Aurelie Comte
Wasila Dahdul
Alex Dececchi
Nizar Ibrahim
David Blackburn
Erik Segerdell
Chris Mungall - http://orcid.org/0000-0002-6601-2165
Melissa Haendel
https://github.com/cmungall/uberon/
VHOG
TAO part_of NCBITaxon:32443
OlatDv part_of NCBITaxon:8089
EMAPA part_of NCBITaxon:10090
ZFA part_of NCBITaxon:7954
MmusDv part_of NCBITaxon:10090
FBdv part_of NCBITaxon:7227
HBA part_of NCBITaxon:9606
DMBA part_of NCBITaxon:10090
MA part_of NCBITaxon:10090
DHBA part_of NCBITaxon:9606
TADS part_of NCBITaxon:6939
MBA part_of NCBITaxon:10090
XAO part_of NCBITaxon:8353
WBls part_of NCBITaxon:6237
HAO part_of NCBITaxon:7399
HsapDv part_of NCBITaxon:9606
PBA part_of NCBITaxon:9443
FBbt part_of NCBITaxon:7227
TGMA part_of NCBITaxon:44484
ZFS part_of NCBITaxon:7954
AAO part_of NCBITaxon:8292
EHDAA2 part_of NCBITaxon:9606
MFO part_of NCBITaxon:8089
SPD part_of NCBITaxon:6893
WBbt part_of NCBITaxon:6237
FMA part_of NCBITaxon:9606
https://github.com/obophenotype/uberon/issues/
ISBN:0683400088 Stedman's Medical Dictionary
Common_Upper_Mammalian_Brain_Ontology_(Cumbo)
ISBN:0073040584 Vertebrates, Kardong
https://docs.google.com/document/d/1cPWBqrl_Qy7XHEWFqtR_PgQX61yRkgGuLaiDpnEXxkE/edit
https://docs.google.com/document/d/16JZOuH9sh_a8uIXA4cqg0Q1H6MV5yCj3-rhuKsZoV_U/edit
cl.owl
go.owl
palaeos.com
ISBN:9780397517251 Surgical anatomy of the hand and upper extremity. By James R. Doyle and Michael J. Botte
ISBN:0443065837 Human embryology, Larsen
https://docs.google.com/document/d/1r9kNPpFYGdu0SpJDLyFAVQczBlG0wAZCBMd18gG3Ot8/edit#
ISBN:0123813611 Comparative Anatomy and Histology: A Mouse and Human Atlas, Treuting and Dintzis
aao.owl
aba.owl
ISBN:0226313379 Fins into Limbs: Evolution, Development, and Transformation, Hall
efo.owl
nifstd
ISBN:9780674021839 The Tree of Life - Guillaume Lecointre, Herve Le Guyader
www.brain-map.org
xao.owl
https://docs.google.com/document/d/1MnUgispgGfNQoezYzWzzGTnkAnI0gzRnJIwdip6MMtw/edit
ISBN:0030229073 Invertebrate Zoology, Barnes
http://wiki.phenotypercn.org/wg/phenotypercn/index.php?title=Neural_Crest_Workshop
hp.owl
emapa.owl
aeo.owl
fbbt.owl
ISBN:1588903958 Principles and practice of pediatric neurosurgery By A. Leland Albright, P. David Adelson, Ian F. Pollack
vsao.owl
ISBN:1607950324 Craniofacial Embryogenetics & Development, 2nd edition, Sperber
ehdaa2.owl
tao.owl
bto.owl
ISBN:0471888893 Comparative Vertebrate Neuroanatomy: Evolution and Adaptation by Butler and Hodos
PMID:16417468 Forgotten and novel aspects in pancreas development, Pieler and Chen
ISBN:1588900649 Color Atlas and Textbook of Human Anatomy: Nervous system and sensory organs By Werner Kahle, Michael Frotscher
fma.owl
caro.owl
ma.owl
bila.owl
MESH
ISBN:9780120749034 The laboratory rat
https://docs.google.com/spreadsheet/ccc?key=0Aj8NJdyb-leqdDM0R3hTVTRHRExDVjRCSkZEbDc5N1E#gid=0
kupo.owl
dbpedia.org
vhog.owl
http://wiki.phenotypercn.org/wiki/August_2012_Notes
NIF-GrossAnatomy.owl
ISBN:9780878932504 Developmental Biology
ISBN:978-0-12-369548-2 Principles of Developmental Genetics, Sally A Moody
wbbt.owl
PMID:11433360 Placental development: lessons from mouse mutants
mp.owl
zfa.owl
uberon
Paula Duek Roggli
Sarah Whitcher Kansa - https://orcid.org/0000-0001-7920-5321
Yvonne Bradford
George Gkoutos
Ceri Van Slyke
Maryann Martone
James Balhoff
James Malone
Anna Anagnostopoulos
Phenoscape Project
Marc Robinson-Rechavi
Trish Whetzel
Brian K Hall
Bill Bug
Lydie Lane
Terry Hayamizu
Frederic Bastian
neXtProt project
Jonathan Bard
Gene Ontology Consortium
Alexander Diehl
Robert Druzinsky
Hilmar Lapp
Carlo Torniai
David Hill
Paul Sereno
Duncan Davidson
Onard Mejino
Bgee Project - http://bgee.unil.ch
David Osumi-Sutherland
Mark Engelstad - https://orcid.org/0000-0001-5889-4463
Rebecca Foulger
Terry Meehan
Ann Maglia
Shahim Essaid
Paula Mabee
Catherine Leroy
Cynthia Smith
Paul Schofield
Alan Ruttenberg
Suzanna Lewis
NIF Project - http://neuinfo.org/
PATO Project
https://obo.svn.sourceforge.net/svnroot/obo/uberon/
http://uberon.org
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/reflexivity_axioms.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ncbitaxon_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2020-09-16/ncbitaxon_import.owl>))) [Axioms: 1917 Logical Axioms: 1081]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/contexts/context-human.owl>) VersionIRI(<null>))) [Axioms: 2 Logical Axioms: 2]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/pato_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2020-09-16/pato_import.owl>))) [Axioms: 433 Logical Axioms: 143]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/disjoint_union_over.owl>) VersionIRI(<null>))) [Axioms: 38 Logical Axioms: 38]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/cl_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2020-09-16/cl_import.owl>))) [Axioms: 25227 Logical Axioms: 6353]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/TEMP>) VersionIRI(<null>))) [Axioms: 437 Logical Axioms: 0]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/chebi_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2020-09-16/chebi_import.owl>))) [Axioms: 955 Logical Axioms: 425]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/nbo_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2013-10-21/nbo_import.owl>))) [Axioms: 30 Logical Axioms: 9]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ro_import.owl>) VersionIRI(<null>))) [Axioms: 1114 Logical Axioms: 482]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2014-05-17/ext.owl>))) [Axioms: 2327 Logical Axioms: 1383]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon-bridge-to-bfo.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 9]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/pr_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2020-09-16/pr_import.owl>))) [Axioms: 42 Logical Axioms: 13]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/ext.owl>) VersionIRI(<null>))) [Axioms: 26464 Logical Axioms: 4904]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/envo_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2013-10-21/envo_import.owl>))) [Axioms: 28 Logical Axioms: 7]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/uberon/go_import.owl>) VersionIRI(<http://purl.obolibrary.org/obo/uberon/releases/2020-09-16/go_import.owl>))) [Axioms: 6827 Logical Axioms: 4059]