analysis subset ontology module
|
IAO_8000008 |
[An ontology module that is intended for usage in analysis or discovery applications.] |
subset ontology module
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IAO_8000006 |
[An ontology module that is extracted from a main ontology module and includes only a subset of entities or axioms.] |
single layer subset ontology module
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IAO_8000009 |
[A subset ontology that is largely comprised of a single layer or strata in an ontology class hierarchy. The purpose is typically for rolling up for visualization. The classes in the layer need not be disjoint.] |
ontology module
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IAO_8000000 |
|
variant genome
|
GENO_0000033 |
[A genome that varies at one or more loci from the sequence of some reference genome.] |
genome
|
SO_0001026 |
[A collection of sequence features (typically a collection of chromosomes) that covers the sum genetic material within a cell or virion (where 'genetic material' refers to any nucleic acid that is part of a cell or virion and has been inherited from an ancestor cell or virion, and/or can be replicated and inherited by its progeny)] |
sequence_alteration
|
SO_0001059 |
[A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence.] |
reference genome
|
GENO_0000914 |
[A genome whose sequence is identical to that of a genome sequence considered to be the reference.] |
curation subset ontology module
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IAO_8000007 |
[A subset ontology that is intended as a whitelist for curators using the ontology. Such a subset will exclude classes that curators should not use for curation.] |
reference allele
|
GENO_0000036 |
[An allele whose sequence matches what is consdiered to be the reference sequence at that location in the genome.] |
allele
|
GENO_0000512 |
[One of a set of sequence features known to exist at a particular genomic location.] |
reference
|
GENO_0000152 |
[An attribute inhering in a feature that is designated to serve as a standard against which 'variant' versions of the same location are compared.] |
bridge ontology module
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IAO_8000004 |
[An ontology module that consists entirely of axioms that connect or bridge two distinct ontology modules. For example, the Uberon-to-ZFA bridge module.] |
RNAi_reagent
|
SO_0000337 |
|
gene knockdown reagent
|
GENO_0000533 |
|
family
|
PCO_0000020 |
[A domestic group, or a number of domestic groups linked through descent (demonstrated or stipulated) from a common ancestor, marriage, or adoption.] |
collection of organisms
|
PCO_0000000 |
[A material entity that consists of two or more organisms, viruses, or viroids.] |
import ontology module
|
IAO_8000005 |
[A subset ontology module that is intended to be imported from another ontology.] |
junction
|
SO_0000699 |
|
sequence_feature
|
SO_0000110 |
[Any extent of continuous biological sequence.] |